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mosdepth 0.3.14 (new formula)#292448

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BenjaminDEMAILLE:mosdepth
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mosdepth 0.3.14 (new formula)#292448
BenjaminDEMAILLE wants to merge 1 commit into
Homebrew:mainfrom
BenjaminDEMAILLE:mosdepth

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@BenjaminDEMAILLE

@BenjaminDEMAILLE BenjaminDEMAILLE commented Jul 10, 2026

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  • Have you followed the guidelines for contributing?
  • Have you ensured that your commits follow the commit style guide?
  • Have you checked that there aren't other open pull requests for the same formula update/change?
  • Have you built your formula locally with HOMEBREW_NO_INSTALL_FROM_API=1 brew install --build-from-source <formula>?
  • Is your test running fine brew test <formula>?
  • Does your build pass brew audit --strict <formula> (after doing HOMEBREW_NO_INSTALL_FROM_API=1 brew install --build-from-source <formula>)? If this is a new formula, does it pass brew audit --new <formula>?

  • AI was used to generate or assist with generating this PR. Please specify below how you used AI to help you, and what steps you have taken to manually verify the changes.

AI-assisted contribution by Claude Code (Claude Opus 4.8), which authored ~100% of the formula. Build (--build-from-source), brew test, and brew audit --new --strict were executed and verified locally by the AI on macOS 26 (Tahoe) / arm64 (Apple Silicon).

mosdepth is a fast BAM/CRAM depth-of-coverage calculator (Pedersen & Quinlan, Bioinformatics 2018), until now only available via the brewsci/bio tap.

The Nim library dependencies (hts-nim, docopt, regex, unicodedb) are vendored as resource blocks and compiled offline. Optional --d4 output is intentionally disabled: it requires the out-of-core d4 library, so the build omits -d:d4. All other functionality is present and exercised by the test (real coverage run on a generated BAM).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
@github-actions github-actions Bot added the new formula PR adds a new formula to Homebrew/homebrew-core label Jul 10, 2026
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Thanks for your pull request. This has been closed because it appears to use an incomplete or outdated pull request template.

Please edit this pull request to fill in the current pull request template. This workflow will reopen this pull request automatically once the template is complete. Do not open a new pull request for this.

@github-actions github-actions Bot closed this Jul 10, 2026
@github-actions github-actions Bot reopened this Jul 10, 2026
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