mosdepth 0.3.14 (new formula)#292448
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Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
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HOMEBREW_NO_INSTALL_FROM_API=1 brew install --build-from-source <formula>?brew test <formula>?brew audit --strict <formula>(after doingHOMEBREW_NO_INSTALL_FROM_API=1 brew install --build-from-source <formula>)? If this is a new formula, does it passbrew audit --new <formula>?AI-assisted contribution by Claude Code (Claude Opus 4.8), which authored ~100% of the formula. Build (
--build-from-source),brew test, andbrew audit --new --strictwere executed and verified locally by the AI on macOS 26 (Tahoe) / arm64 (Apple Silicon).mosdepth is a fast BAM/CRAM depth-of-coverage calculator (Pedersen & Quinlan, Bioinformatics 2018), until now only available via the
brewsci/biotap.The Nim library dependencies (hts-nim, docopt, regex, unicodedb) are vendored as
resourceblocks and compiled offline. Optional--d4output is intentionally disabled: it requires the out-of-core d4 library, so the build omits-d:d4. All other functionality is present and exercised by the test (real coverage run on a generated BAM).